-------------------------------------------------------------------- SEMINAR OF THE DYNAMICAL SYSTEMS GROUP Institute for Computational Sciences and Informatics -------------------------------------------------------------------- Molecular Mechanics Suzanne W. Slayden Chemistry Department, George Mason University Over the last 25 years or so, molecular mechanics has developed into a standard powerful method for studying molecular structure and related properties. The major distinction between the molecular mechanical and quantum mechanical approaches to studying molecular structure is that molecular mechanics does not usually consider the electrons in the molecule explicitly. Molecular mechanics treats the atoms and their associated electrons as units interconnected by potential functions whose mathematical form is familiar from classical mechanics. The resulting force field contains adjustable parameters that are optimized to obtain the best fit of calculated and experimental properties of the molecules, such as geometries, conformational energies, heats of formation, or other properties. All of the equations are sufficiently simple that they can be solved very rapidly with modern computers and thus permit calculations on even very large molecules. Molecular mechanics calculations will be demonstrated using HyperChem molecular modeling software. Monday , April 17, 1995 5:30 pm Room 310, Science & Tech. I -------------------------------------------------------------------